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SMB 2010 / BIOMAT 2010 - Rio de Janeiro, 24th -
29th July 2010
CT - CONTRIBUTED TALK SESSIONS
Each
contributed talk has a duration of 15 min + 05
min for questions and discussions.
Rooms are equipped with data projectors. A
suggestion for contributed talk presenters
is to bring their contributions on USB drives to be
loaded before the beginning of the section
ACCEPTED CONTRIBUTED TALKS:
CT1 - MATHEMATICAL EPIDEMIOLOGY I
Chairman: Carlos Castillo Chavez - Arizona
State University, USA
CT11 - Diffusive Instability of a Disease.
Edgar Diaz, Arizona State
University, USA
CT12 -
Modelling the Control of Malaria by genetically
modified vectors.
Andres
A. Ramirez, Fredy Olarte, Carlos Clavijo,
Hernando Diaz,
Universidad Nacional de Colombia
CT13 - Modeling decision making considering
collective versus individual interests in public
health
Eduardo Massad, Armando Freitas da Rocha,
Marcelo Nascimento Burattini, Cláudio
José Struchiner
University of S. Paulo; Oswaldo Cruz Foundation,
Brazil
CT14
- A Nested Model to Study Spread of Tuberculosis
Aquino L. Espindola, Chris Bauch,
Fluminense Federal University, Brazil;
University of Guelph, Ontario, Canada
CT15
- A risk dispersion study of animal diseases: the
avian influenza case.
Juliana M. R. de Souza, João Frederico C. A.
Meyer
State University of Campinas, Brazil
CT16 -
Critical
imune and vaccination thresholds for deterrmining
multiple epidemic waves.
Laura Matrajt, Ira Longini
University of Washington, Fred Hutchinson Cancer
Research Center, Seattle, Washington, USA
CT2 - DEVELOPMENTAL BIOLOGY
Chairman: Raymond Mejía - National Institutes
of Health, USA
CT21
-
Calculating metabolic responses from the
stoichiometric network and optimization principles.
Miguel Ponce de Leon, Hector Cancela, Luis
Acerenza
Universidad de la Republica Oriental del Uruguay
CT22 - On Models of Early Biological Evolution:
Does the error threshold really exist?
Georgy Karev, Lockheed Martin
National Institutes of Health, USA
CT23 - Variations on a Theme by Darwin: A
Topological Perspective on Quantifying Variation in
the
Genotype- Phenotype Relation.
Amir H. Assadi , Hesam T.
Dashti, Sabrina Guettes, Jernej Tonejc, Liya Wang
University of Wisconsin, Madison, USA
CT24- Evolution: ON/OFF.
Lennart Hilbert, McGill
University, Canada
CT3 - COMPUTATIONAL BIOLOGY
Chairman: John Jungck - Beloit College, USA
CT31
- DifFUZZY:
A fuzzy spectral clustering algorithm for complex
data sets.
Ornella Cominetti , Anastasios Matzavinos ,
Sandhya Samarasinghe , Don Kulasiri , Sijia Liu ,
Philip K. Maini , Radek Erban
University of Oxford,UK;
Iowa State University,
Lincoln University,
USA
CT32 - Universal features for coding DNA
prediction
Diego
Frías, Nicolas Carels- State University of
Bahia, Oswaldo Cruz Foundation, Brazil
CT33 - Linear trees, lattice walks and RNA
base-point mutations
Asamoah
Nkwanta ,Sumitra Rudra
Morgan State University, USA
CT34 - Towards a Colonic Crypt Model With
Realistic, Deformable Geometry
Sara-Jane Dunn, James Osborne, Helen Byrne,
Jon Chapman, David Gavaghan
University of Oxford, UK, University of Nottingham,
UK
CT4 - POPULATION BIOLOGY I
Chairman: José F. Fontanari - University of S.
Paulo, Brazil
CT41 - The Influence of Mating
Strategies on the Allee Effect
Dorothy Wallace, Rashmi Agarwal, Mitsuo
Kobayashi
Dartmouth College, USA
CT42 - Hubbell, Levins, and Allee: Reconciling
stochastic and deterministic models of community
dynamics
Andrew E. Noble, William F. Fagan
University of Maryland
CT43 - Implication of predator and prey
stage-structures for the dynamics of intraguild
predation
Gabriel Andreguetto Maciel, Roberto André
Kraenkel
Institute for Theoretical Physics, UNESP, Brazil
CT44 -
On the use of mechanistic and data-driven models in
population dynamics: the case of tuberculosis
in the US over that past two centuries
Juan
Pablo Aparicio,
Carlos Castillo-Chavez
Instituto de Investigacion en Energias no
Convencionales, CONICET-UNSa , School of Human
Evolution and Social Changes,
Arizona State University, USA
CT45 - Eating competitors speeds up invasions
Richard
Hall, University of Georgia, USA
CT5 - IMMUNOLOGY
Chairman: Ramit Mehr - Bar-Ilan University,
Israel
.
CT51 - Modelling Natural Killer cell
Development and Education
Ramit Mehr;
Bar Ilan University, Israel
CT52 -
The optimal T cell response.
Koichi Saeki, Yoh Iwasa
Kyushu University, Japan
CT53 -
Antibody responses during viral infection
Stanca Ciupe, University of Louisiana at
Lafayette, USA
CT54 - Quantitative Analysis of The Number of
CD4 Lymphocytes In Normal and HIV Infection
Aliev B.R., Hidirov B.N., Saidalieva M., Nosirov
B.V.
Academy of Sciences -Republic of Uzbekistan
CT6
- POPULATIONAL GENETICS
Chairman: Charles Pearce - University of
Adelaide, Australia
CT61 - Structure of regulatory networks and
dynamics of bio-molecules: Predicting unknown from
known
Atsushi Mochizuki, Daisuke Saito
Theor. Biol. Lab. RIKEN Advanced Science Institute,
Tokyo Institute of Technology, Japan
CT62 - Gene regulatory network for vertebrate somite
segmentation
Daisuke Saito, Atsushi Mochizuki
Theor. Biol. Lab. RIKEN Advanced Science Institute,
Tokyo Institute of Technology, Japan
CT63 - Evolutionary Dynamics of BRCA1 mutations in
Breast Tumorigenesis
Laura De Vargas Roditi, Franziska
Michor
Memorial Sloan Kettering Cancer Center, USA
CT64 - Modelling the spread of cholera
Charles Pearce, School of Mathematical Sciences,
University of Adelaide, Australia
CT65 - Mobile genetic elements may commit
evolutionary suicide
Nicholas F Britton
University of Bath,
UK
CT7 - POPULATION BIOLOGY II
Chairman: Lia Hemerik - Wageningen University,
Netherlands
CT71-
Generalized populational dynamics models
Brenno Caetano Troca Cabella, Alexandre Souto
Martinez
Departamento de Física e Matemática / FFCLRP/
University of S. Paulo, Brazil
CT72 - Honeybee demography: the vital role of
foragers in maintaining colony populations
Mary Myerscough, David Khoury , Andrew Barron
School of Mathematics and Statistics, University of
Sydney, Australia
CT73 - A tumor model to study tumor
micro environment and growth under the effects of
ionizing irradiation.
Enrique W. Izaguirre , I-Tan Su
Washington University in Saint Louis, USA
CT74 - The spatiotemporal dynamics of African
Cassava Mosaic Disease
Zoe
E. Lawrence, Dorothy Wallace
Dartmouth College, USA
CT75 - Control of West Nile Virus by Insecticide in
the Presence of an Avian Reservoir
Emily Baumrin, Jocelyn Drexinger, Jennifer
Sotsky, Dorothy Wallace
Dartmouth College, USA
CT8
- NEUROBIOLOGY
Chairman: Michael Mackey - McGill University,
Canada
CT81 - A mathematical model of ionic currents
through the microtubule lumen
Holly Freedman, Vahid Rezania, Avner Priela,
Eric Carpenter, Sergei Noskov, Jack Tuszynski
MacEwan University, Edmonton, Alberta, Canada
CT82 - Mathematical modeling of the switch between
spaced and massed learning in Aplysia californica
Faisal Naqib, Carole Abi Farah, Christopher C
Pack, Wayne S Sossin.
Montreal Neurological Institute. McGill University,
Canada
CT83 - Non-linear analysis and clustering of
neuroepithelial cell proliferation in chick embryo
central
nervous system
J.
Mazzeo, M. Rapacioli, S. Duarte, V. Flores
Buenos Aires University, Favaloro University
CT9
- POPULATION BIOLOGY III
Chairman: Hector Puebla - Universidad Autonoma
Metropolitana, Azcapotzalco, Mexico
CT91 - A hybrid model of
interaction between tumor cells and microenviroment
Yangjin Kim, Sookkyung Lim , Avner
Friedman
University of Michigan, University of Cincinnati
Ohio State University
CT92 - Cancer drug treatment causes evolution
Edward Flach, Inna Fedorenko, Keiran S M
Smalley , Alexander Anderson
Moffitt Cancer Center,Tampa, FL, USA
CT93 - Reintroduction of the otter (Lutra
lutra): Analysing the viability of a reintroduced
population with
matrix population models
Lia Hemerik, Maëlle Seignobosc, and
Hans-Peter Koelewijn
Wageningen University and Research Centre,
Netherlands
CT94 - A modified Leslie-Gower predator-prey model
with hyperbolic functional response and Allee effect
on prey
Claudio Arancibia-Ibarra, Eduardo
González-Olivares,
Universidad Católica de Valparaíso, Chile
CT95 - Image analysis for the monitoring of an
invasive squirrel species
V.V. Benitez, C. Gozzi, M. Hertzriken,
S.R.Doyle,
Universidad Nacional de Luján, Universidad Nacional
de General Sarmiento, Argentina.
CT96 - Optimal management of a fishing resource
considering a marine protected area
Jaime
Huincahue-Arcos, Eduardo González-Olivares
Universidad Católica de Valparaíso, Chile
CT10 - ECOLOGY I
Chairman: Fernando Momo - University of
General Sarmiento, Argentina
CT101 - Cultural evolution in a lattice: the
majority-vote model as a frequency-dependent bias
model
of cultural transmission
Jose Fernando Fontanari,
University of S. Paulo, Brazil
CT102 - The Bioaccumulation of Methylmercury in an
Aquatic Ecosystem
Nicole
Johns, Jane Kurtzman, Samuel Rauch, Zoe Shtasel-Gottlieb,
Dorothy Wallace,
Dartmouth College, USA
CT103 - Fractal habitats and ecology: ecological
effects of self-similarity in marine, freshwater and
soil environments
Fernando
Momo, Santiago Doyle, Andrés Duhour.
Universidad Nacional de General Sarmiento - Conicet
CT104 - ALLOMETRIC Trade-off, neutral and
niche-based processes Explains Phytoplankton species
coexistence and size structure in rocha coastal
lagoon-Uruguay
Angel M. SeguraDanilo
Calliari ,Carla Kruk,
Daniel Conde, Sylvia Bonilla, Fort Hugo
Universidad de la República, Uruguay
CT11 - BIOFLUIDYNAMICS
Chairman: John Bush - Massachussets Institute
of Technology, USA
CT111 - Modeling of Amoeboid Locomotion and
Designing Amoeboid Robot
Ryo Kobayashi, Toshiyuki Nakagaki , Akio
Ishiguro
Hiroshima University, Future Univ.-Hakodate, Tohoku
University, Japan
CT112 - Shear thinning of actin in endothelial cell
mechanotransduction
Bori Mazzag, Elika Ketabchi,
Humboldt State University, USA
CT113 - Modeling and numerical simulations of the
fluid dynamics of feeding in the upside down
jellyfish, Cassiopea sp.
Christina
Hamlet, Laura Miller, University of North
Carolina at Chapel Hill, USA
CT114 - A hydrodynamic approach to locomotion
of flagellated bacteria near surfaces
Henry Shum, Eamonn Gaffney
Centre for Mathematical Biology, Mathematical
Institute, University of Oxford, UK
CT115 - Flight of the smallest insects
Laura
Miller, University of North Carolina at Chapel Hill,
USA
CT116 - Non-linear instabilities in
flagellar dynamics may affect cell behaviour
H. Gadęlha, E.A. Gaffney, D.J. Smith and J.C.
Kirkman-Brown
University of Oxford, University of Birmingham, UK
CT12 - MATHEMATICAL EPIDEMIOLOGY II
Chairman: Eduardo Massad - University of S.
Paulo
CT121 - The Influence of Education in Reducing
the HIV Epidemic
Hem
Raj Joshi, Xavier University,USA
CT122 - Mathematical model of vaccination against
influenza A(H1N1)
Irene Duarte Gandica, Milena Corrales Álvarez
,
Universidad del Quindío. Armenia, Quindío, Colombia.
CT123 - Country and Disease Specific Epidemiological
Modeling: A Review
Ebru Selin Selen,
Burcu Adivar,
Izmir University of Economics, Turkey
CT124 - Incidence of HIV on Tuberculosis in Armenia,
Colombia
Milena
Corrales Alvarez, Elmer
de la Pava S. , Luis
Hernando Hurtado
Universidad
del Quindío,
Colombia
CT125 - A metapopulation affected by a SIS
disease. Consequences in the Sink of Infections in
the
Source.
F. Cordova-Lepe, R. Del-Valle,
Universidad Catolica del Maule, Chile
CT126 - Continuous
Mathematical Model For the Dynamics spread of
Influenza A H1N1 virus, and Its Sensitivity
and
sensibility analysis - Case: Peru.
David
Requena-Anicama, JoseSegovia-Juarez
Universidad Nacional Mayor de San Marcos,
Universidad Peruana Caetano Heredia, Peru
CT13
- SYSTEMS BIOLOGY I
Chairman: James Keener - University of Utah,
USA
CT131 - Instabilities in model of gene regulatory
networks with delay and stochasticity
Mathieu
Gaudreault,
Jorge Vinals, McGill University, Canada
CT132 - From master equations to the mean-field: A
novel analysis of deterministic epidemic models
on contact networks
Kieran
J. Sharkey, University of Liverpool, UK
CT133 - The evolution of virulence in RNA
viruses under a competition-colonization trade-off
Edgar Delgado-Eckert, Samuel Ojosnegros,
Niko Beerenwinkel.
Department of Biosystems Science , ETH Zurich,
Basel, Switzerland.
CT134 - Dynamic analysis of a genetic circuit for
metabolic feedback regulation
Diego
A. Oyarzún, Madalena Chaves,
Institut national de recherche
en informatique
et automatique
(INRIA),
France
CT135 -
Spatio-Temporal Calcium
Dynamics in the Interstitial Cells of Cajal
Shawn
Means , James Sneyd, University of
Auckland, New Zealand
CT14 - MOLECULAR BIOLOGY I
Chairman: Jack Tuszynski - University of
Alberta, Canada
CT141 - Trying to understand the prion dynamics: a
mathematical analysis of prion proliferation,
application to models in epidemiology
Laurent
Pujo-Menjouet, Glenn F. Webb, Meredith L. Greer,
Jean-Pierre Liautard,
Erwan Hingant, Romain Yvinec
Université Claude Bernard Lyon France
CT142 - Dynamics of prion proliferation, from
biological experiments to mathematical models
Erwan Hingant, Institut Camille Jordan,
Université de Lyon , France
CT143 - In silico single-molecule manipulation
with rigid body dynamics: an efficient tool for
computing linking number.
Carrivain
Pascal - Université Pierre et Marie Curie, France
CT144 - On the topology of chromatin fibers
Maria Barbi, Julien Mozziconacci, Hua Wong,
Jean-Marc Victor,
Université Pierre et Marie Curie, France
CT145 -
Linear
Optimization approach to the Stability of Amide
Planes in Proteins
Rubem
P. Mondaini, Sandro Vilela - Federal University of Rio de Janeiro,
Brazil
CT15
- MOLECULAR BIOLOGY II
Chairman: Maya Mincheva - Northern
Illinois University, USA
CT151 - Optimization of Nanopore Experiments
performed under Constant Voltage
Christopher Simon, Hongyun Wang
University of California, Santa Cruz, USA
CT152 - Diffusion and Bursting in gene
expression
Romain Yvinec, Institut Camille Jordan, Université
Claude Bernard, Lyon, France
CT153 - Differential geometry based multiscale
models
Guowei
Wei, Michigan State University,USA
CT154 - Markov Chain Modelling of Polymer
Translocation through membrane pores
Felipe Mondaini, Luca Moriconi
Federal University of Rio de Janeiro, Brazil
CT155
-
Boundary Conditions on Protein Structures in
Assemblies
with Non-Crystallographic Symmetries
Thomas Keef, University of York, UK
CT16 - MORPHOLOGY I
Chairman: Philip Maini - University of Oxford,
UK
CT161 - Modelling cell migration in the mouse
embryo
Aaron M. Smith, Shankar Srinivas, Ruth
E. Baker, David Kay, Philip K. Maini,
University of Oxford, UK
CT162 - A comparison between discrete and continuous
models of feather bud formation
Charlotte Jupp, Ruth Baker,
Philip Maini, University of Oxford, UK
CT163 - A mathematical model of somitogenesis
pattern dynamics
Philip
J. Murray , Ruth E. Baker, Philip K. Maini,
UK
CT164 - Chaos in the Turing regime of a
reaction-diffusion system.
J. L. Aragon , R.A. Barrio , T.E. Woolley ,
R.E. Baker , P.K. Maini
.
Universidad Autonoma de Mexico,UNAM, Mexico,
University of Oxford, UK.
CT17
- ECOLOGY II
Chairman: Fernando Cordova-Lepe - Universidad
Catolica del Maule, Chile
CT171 - Evolutionary dynamics of Climate Change
under the Collective Risk Dilemma
Jorge
M. Pacheco, Francisco C. Santos,
Universidade do Minho, Universidade Nova de
Lisboa,Portugal
CT172 - Regularity of Optimal Cost functional
applied to study of Environmental Pollution
Santina de F. Arantes, Jaime E. M. Rivera,
National Laboratory for Scientific Computing, Brazil
CT173 - A Model for Dispersion of Pollutants in the
Air using Fuzzy parameters
C.C. Oliveira, P.H.C. Mello, R.S.M. Jafelice,
J.F.C.A. Meyer,
Federal University of Uberlandia, State University
of Campinas, Brazil
CT174 - Analysis of robust equilibrium of uncertain
predator-prey systems in sugar cane crops
Alfredo Del Sole Lordelo, Iris Gobato
Gercov
Universidade Federal do ABC, Brazil
CT18 - MORPHOLOGY II
Chairman: Dorothy Wallace - Dartmouth College,
USA
CT181 - Notochord cellular intercalation in
zebrafish
Colette
Calmelet, Nick Flann, Diane Sepich
California State University, USA
CT182 - Tumor growth and morphology: Directed cell
migration and the gain and loss of the
self-metastatic phenotype
Heiko Enderling, Lynn Hlatky, Philip
Hahnfeldt
Tufts University School of Medicine,USA
CT183 - An Ecological Succession with Multifractal
Properties: The Spatial Pattern of Periphyton
Communities
Leonardo
Saravia, Fernando Momo, Adonis Giorgi.
Universidad Nacional de General Sarmiento, Argentina
CT184 - Control and synchronizaction of chemotaxis
patterning
Hector Puebla, Eliseo Hernandez-Martinez,
Sergio Martinez-Delgadillo, Mexico
CT19 - SYSTEMS BIOLOGY II
Chairman: Nick Britton
- University of Bath, UK
CT191 - Selection for efficient cooperation can
drive the evolution of intelligence
Luke
McNally, Andrew L. Jackson;
Zoology Department, School of Natural Science,
Trinity College Dublin
CT192 - The Ecology of cancer: a Network perspective
Ferenc Jordan, David Basanta
University of Trento Centre for Computational and
Systems Biology, Trento, Italy.
Moffitt Cancer Center, Tampa, FL, USA
CT193 - Effects of motility and contact inhibition
on tumor viability: a discrete simulation using
the cellular potts model
Jonathan
Li, John Lowengrub, University of California,
Irvine, USA
CT194 - Stabilizing Control for a Pulsatile
Cardiovascular Mathematical Model
Aurelio de los Reyes , Franz Kappel
University of Philippines, University of Graz,
Austria
CT195 - A new method for testing thermodynamic
optimization of ecological systems
S.R.Doyle , F.M. Carusela, S. Guala ,
F.R.Momo
Instituto de Ciencias, Universidad Nacional de
General Sarmiento, Argentina
CT196 - Model transcriptional networks with
continuously varying expression levels
Mauricio
Carneiro Harvard University
CT20 - MATHEMATICAL EPIDEMIOLOGY III
Chairman: Louis Gross - University of
Tennessee, USA
CT201 - Age-structured modeling for the directly
transmitted infections { II: Evaluating the
basic reproduction number
C.H. Dezotti, H.M. Yang
Federal Rural University of Pernambuco, State
University of Campinas, Brazil
CT202 - A NEW MODEL FOR THE FORCE OF INFLUENZA
INFECTION
M. Rossi, H. J. Shimozako, G.
Ketsetzis
University of S. Paulo, Brazil
Health Protection Agency,UK
CT203 -
Assessing the effect
of targeted prophylaxis during the early phase
of influenza A (H1N1) 2009 pandemic in Argentina
Andrés
Finkelsteyn,
Instituto de
Investigaciones Científicas y Técnicas para la
Defensa, Argentina
CT204- Bayesian Parameter Estimation in
Dynamical Models with Applications to Forecasting
Flavio Coelho, Gulbenkian Institute - Portugal
CT205 - Modeling the Impact of Age-Structured
Vaccination Strategies
César
Castilho Univ. Federal de Pernambuco - Brazil
CT21 - SYSTEMS BIOLOGY III
Chairman: Roberto A. Kraenkel - State
University of S.Paulo, Brazil
CT211 - The Hidden Energy in Irreversible
Fluctuations as the Origin of Noise Induced
Phenomena
Lisa Bishop, Hong Qian
Department of Applied Mathematics, University of
Washington, USA
CT212 - Non-Essential Sites Improve Phosphorylation
Switch
Liming Wang, Qing Nie, German Enciso
University of California Irvine
CT213 - Lie symmetries and stochastic modeling of
gene regulation
Alexandre
F. Ramos, University of S. Paulo, Brazil
CT214- Multilevel modeling of the spatio-temporal
dynamics of phototrophic biofilms
Inês Isidro, João Santos, Daniel Damineli,
Andreas Bohn
Instituto de Tecnologia Quimica e Biologica,
Universidade Nova de Lisboa, Oeiras, Portugal
CT215 - Transfer functions in dynamic generalized
linear models with application to
the effect of atmospheric pollution on health
Mariane Alves - Federal University of Rio de Janeiro
IM-UFRJ ( Brazil)
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